import {Request} from '../lib/request'; import {Response} from '../lib/response'; import {AWSError} from '../lib/error'; import {Service} from '../lib/service'; import {WaiterConfiguration} from '../lib/service'; import {ServiceConfigurationOptions} from '../lib/service'; import {ConfigBase as Config} from '../lib/config-base'; import {Readable} from 'stream'; interface Blob {} declare class Omics extends Service { /** * Constructs a service object. This object has one method for each API operation. */ constructor(options?: Omics.Types.ClientConfiguration) config: Config & Omics.Types.ClientConfiguration; /** * Stops a multipart upload. */ abortMultipartReadSetUpload(params: Omics.Types.AbortMultipartReadSetUploadRequest, callback?: (err: AWSError, data: Omics.Types.AbortMultipartReadSetUploadResponse) => void): Request; /** * Stops a multipart upload. */ abortMultipartReadSetUpload(callback?: (err: AWSError, data: Omics.Types.AbortMultipartReadSetUploadResponse) => void): Request; /** * Deletes one or more read sets. */ batchDeleteReadSet(params: Omics.Types.BatchDeleteReadSetRequest, callback?: (err: AWSError, data: Omics.Types.BatchDeleteReadSetResponse) => void): Request; /** * Deletes one or more read sets. */ batchDeleteReadSet(callback?: (err: AWSError, data: Omics.Types.BatchDeleteReadSetResponse) => void): Request; /** * Cancels an annotation import job. */ cancelAnnotationImportJob(params: Omics.Types.CancelAnnotationImportRequest, callback?: (err: AWSError, data: Omics.Types.CancelAnnotationImportResponse) => void): Request; /** * Cancels an annotation import job. */ cancelAnnotationImportJob(callback?: (err: AWSError, data: Omics.Types.CancelAnnotationImportResponse) => void): Request; /** * Cancels a run. */ cancelRun(params: Omics.Types.CancelRunRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Cancels a run. */ cancelRun(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Cancels a variant import job. */ cancelVariantImportJob(params: Omics.Types.CancelVariantImportRequest, callback?: (err: AWSError, data: Omics.Types.CancelVariantImportResponse) => void): Request; /** * Cancels a variant import job. */ cancelVariantImportJob(callback?: (err: AWSError, data: Omics.Types.CancelVariantImportResponse) => void): Request; /** * Concludes a multipart upload once you have uploaded all the components. */ completeMultipartReadSetUpload(params: Omics.Types.CompleteMultipartReadSetUploadRequest, callback?: (err: AWSError, data: Omics.Types.CompleteMultipartReadSetUploadResponse) => void): Request; /** * Concludes a multipart upload once you have uploaded all the components. */ completeMultipartReadSetUpload(callback?: (err: AWSError, data: Omics.Types.CompleteMultipartReadSetUploadResponse) => void): Request; /** * Creates an annotation store. */ createAnnotationStore(params: Omics.Types.CreateAnnotationStoreRequest, callback?: (err: AWSError, data: Omics.Types.CreateAnnotationStoreResponse) => void): Request; /** * Creates an annotation store. */ createAnnotationStore(callback?: (err: AWSError, data: Omics.Types.CreateAnnotationStoreResponse) => void): Request; /** * Begins a multipart read set upload. */ createMultipartReadSetUpload(params: Omics.Types.CreateMultipartReadSetUploadRequest, callback?: (err: AWSError, data: Omics.Types.CreateMultipartReadSetUploadResponse) => void): Request; /** * Begins a multipart read set upload. */ createMultipartReadSetUpload(callback?: (err: AWSError, data: Omics.Types.CreateMultipartReadSetUploadResponse) => void): Request; /** * Creates a reference store. */ createReferenceStore(params: Omics.Types.CreateReferenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.CreateReferenceStoreResponse) => void): Request; /** * Creates a reference store. */ createReferenceStore(callback?: (err: AWSError, data: Omics.Types.CreateReferenceStoreResponse) => void): Request; /** * Creates a run group. */ createRunGroup(params: Omics.Types.CreateRunGroupRequest, callback?: (err: AWSError, data: Omics.Types.CreateRunGroupResponse) => void): Request; /** * Creates a run group. */ createRunGroup(callback?: (err: AWSError, data: Omics.Types.CreateRunGroupResponse) => void): Request; /** * Creates a sequence store. */ createSequenceStore(params: Omics.Types.CreateSequenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.CreateSequenceStoreResponse) => void): Request; /** * Creates a sequence store. */ createSequenceStore(callback?: (err: AWSError, data: Omics.Types.CreateSequenceStoreResponse) => void): Request; /** * Creates a variant store. */ createVariantStore(params: Omics.Types.CreateVariantStoreRequest, callback?: (err: AWSError, data: Omics.Types.CreateVariantStoreResponse) => void): Request; /** * Creates a variant store. */ createVariantStore(callback?: (err: AWSError, data: Omics.Types.CreateVariantStoreResponse) => void): Request; /** * Creates a workflow. */ createWorkflow(params: Omics.Types.CreateWorkflowRequest, callback?: (err: AWSError, data: Omics.Types.CreateWorkflowResponse) => void): Request; /** * Creates a workflow. */ createWorkflow(callback?: (err: AWSError, data: Omics.Types.CreateWorkflowResponse) => void): Request; /** * Deletes an annotation store. */ deleteAnnotationStore(params: Omics.Types.DeleteAnnotationStoreRequest, callback?: (err: AWSError, data: Omics.Types.DeleteAnnotationStoreResponse) => void): Request; /** * Deletes an annotation store. */ deleteAnnotationStore(callback?: (err: AWSError, data: Omics.Types.DeleteAnnotationStoreResponse) => void): Request; /** * Deletes a genome reference. */ deleteReference(params: Omics.Types.DeleteReferenceRequest, callback?: (err: AWSError, data: Omics.Types.DeleteReferenceResponse) => void): Request; /** * Deletes a genome reference. */ deleteReference(callback?: (err: AWSError, data: Omics.Types.DeleteReferenceResponse) => void): Request; /** * Deletes a genome reference store. */ deleteReferenceStore(params: Omics.Types.DeleteReferenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.DeleteReferenceStoreResponse) => void): Request; /** * Deletes a genome reference store. */ deleteReferenceStore(callback?: (err: AWSError, data: Omics.Types.DeleteReferenceStoreResponse) => void): Request; /** * Deletes a workflow run. */ deleteRun(params: Omics.Types.DeleteRunRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Deletes a workflow run. */ deleteRun(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Deletes a workflow run group. */ deleteRunGroup(params: Omics.Types.DeleteRunGroupRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Deletes a workflow run group. */ deleteRunGroup(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Deletes a sequence store. */ deleteSequenceStore(params: Omics.Types.DeleteSequenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.DeleteSequenceStoreResponse) => void): Request; /** * Deletes a sequence store. */ deleteSequenceStore(callback?: (err: AWSError, data: Omics.Types.DeleteSequenceStoreResponse) => void): Request; /** * Deletes a variant store. */ deleteVariantStore(params: Omics.Types.DeleteVariantStoreRequest, callback?: (err: AWSError, data: Omics.Types.DeleteVariantStoreResponse) => void): Request; /** * Deletes a variant store. */ deleteVariantStore(callback?: (err: AWSError, data: Omics.Types.DeleteVariantStoreResponse) => void): Request; /** * Deletes a workflow. */ deleteWorkflow(params: Omics.Types.DeleteWorkflowRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Deletes a workflow. */ deleteWorkflow(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Gets information about an annotation import job. */ getAnnotationImportJob(params: Omics.Types.GetAnnotationImportRequest, callback?: (err: AWSError, data: Omics.Types.GetAnnotationImportResponse) => void): Request; /** * Gets information about an annotation import job. */ getAnnotationImportJob(callback?: (err: AWSError, data: Omics.Types.GetAnnotationImportResponse) => void): Request; /** * Gets information about an annotation store. */ getAnnotationStore(params: Omics.Types.GetAnnotationStoreRequest, callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Gets information about an annotation store. */ getAnnotationStore(callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Gets a file from a read set. */ getReadSet(params: Omics.Types.GetReadSetRequest, callback?: (err: AWSError, data: Omics.Types.GetReadSetResponse) => void): Request; /** * Gets a file from a read set. */ getReadSet(callback?: (err: AWSError, data: Omics.Types.GetReadSetResponse) => void): Request; /** * Gets information about a read set activation job. */ getReadSetActivationJob(params: Omics.Types.GetReadSetActivationJobRequest, callback?: (err: AWSError, data: Omics.Types.GetReadSetActivationJobResponse) => void): Request; /** * Gets information about a read set activation job. */ getReadSetActivationJob(callback?: (err: AWSError, data: Omics.Types.GetReadSetActivationJobResponse) => void): Request; /** * Gets information about a read set export job. */ getReadSetExportJob(params: Omics.Types.GetReadSetExportJobRequest, callback?: (err: AWSError, data: Omics.Types.GetReadSetExportJobResponse) => void): Request; /** * Gets information about a read set export job. */ getReadSetExportJob(callback?: (err: AWSError, data: Omics.Types.GetReadSetExportJobResponse) => void): Request; /** * Gets information about a read set import job. */ getReadSetImportJob(params: Omics.Types.GetReadSetImportJobRequest, callback?: (err: AWSError, data: Omics.Types.GetReadSetImportJobResponse) => void): Request; /** * Gets information about a read set import job. */ getReadSetImportJob(callback?: (err: AWSError, data: Omics.Types.GetReadSetImportJobResponse) => void): Request; /** * Gets details about a read set. */ getReadSetMetadata(params: Omics.Types.GetReadSetMetadataRequest, callback?: (err: AWSError, data: Omics.Types.GetReadSetMetadataResponse) => void): Request; /** * Gets details about a read set. */ getReadSetMetadata(callback?: (err: AWSError, data: Omics.Types.GetReadSetMetadataResponse) => void): Request; /** * Gets a reference file. */ getReference(params: Omics.Types.GetReferenceRequest, callback?: (err: AWSError, data: Omics.Types.GetReferenceResponse) => void): Request; /** * Gets a reference file. */ getReference(callback?: (err: AWSError, data: Omics.Types.GetReferenceResponse) => void): Request; /** * Gets information about a reference import job. */ getReferenceImportJob(params: Omics.Types.GetReferenceImportJobRequest, callback?: (err: AWSError, data: Omics.Types.GetReferenceImportJobResponse) => void): Request; /** * Gets information about a reference import job. */ getReferenceImportJob(callback?: (err: AWSError, data: Omics.Types.GetReferenceImportJobResponse) => void): Request; /** * Gets information about a genome reference's metadata. */ getReferenceMetadata(params: Omics.Types.GetReferenceMetadataRequest, callback?: (err: AWSError, data: Omics.Types.GetReferenceMetadataResponse) => void): Request; /** * Gets information about a genome reference's metadata. */ getReferenceMetadata(callback?: (err: AWSError, data: Omics.Types.GetReferenceMetadataResponse) => void): Request; /** * Gets information about a reference store. */ getReferenceStore(params: Omics.Types.GetReferenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.GetReferenceStoreResponse) => void): Request; /** * Gets information about a reference store. */ getReferenceStore(callback?: (err: AWSError, data: Omics.Types.GetReferenceStoreResponse) => void): Request; /** * Gets information about a workflow run. */ getRun(params: Omics.Types.GetRunRequest, callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Gets information about a workflow run. */ getRun(callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Gets information about a workflow run group. */ getRunGroup(params: Omics.Types.GetRunGroupRequest, callback?: (err: AWSError, data: Omics.Types.GetRunGroupResponse) => void): Request; /** * Gets information about a workflow run group. */ getRunGroup(callback?: (err: AWSError, data: Omics.Types.GetRunGroupResponse) => void): Request; /** * Gets information about a workflow run task. */ getRunTask(params: Omics.Types.GetRunTaskRequest, callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Gets information about a workflow run task. */ getRunTask(callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Gets information about a sequence store. */ getSequenceStore(params: Omics.Types.GetSequenceStoreRequest, callback?: (err: AWSError, data: Omics.Types.GetSequenceStoreResponse) => void): Request; /** * Gets information about a sequence store. */ getSequenceStore(callback?: (err: AWSError, data: Omics.Types.GetSequenceStoreResponse) => void): Request; /** * Gets information about a variant import job. */ getVariantImportJob(params: Omics.Types.GetVariantImportRequest, callback?: (err: AWSError, data: Omics.Types.GetVariantImportResponse) => void): Request; /** * Gets information about a variant import job. */ getVariantImportJob(callback?: (err: AWSError, data: Omics.Types.GetVariantImportResponse) => void): Request; /** * Gets information about a variant store. */ getVariantStore(params: Omics.Types.GetVariantStoreRequest, callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Gets information about a variant store. */ getVariantStore(callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Gets information about a workflow. */ getWorkflow(params: Omics.Types.GetWorkflowRequest, callback?: (err: AWSError, data: Omics.Types.GetWorkflowResponse) => void): Request; /** * Gets information about a workflow. */ getWorkflow(callback?: (err: AWSError, data: Omics.Types.GetWorkflowResponse) => void): Request; /** * Retrieves a list of annotation import jobs. */ listAnnotationImportJobs(params: Omics.Types.ListAnnotationImportJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListAnnotationImportJobsResponse) => void): Request; /** * Retrieves a list of annotation import jobs. */ listAnnotationImportJobs(callback?: (err: AWSError, data: Omics.Types.ListAnnotationImportJobsResponse) => void): Request; /** * Retrieves a list of annotation stores. */ listAnnotationStores(params: Omics.Types.ListAnnotationStoresRequest, callback?: (err: AWSError, data: Omics.Types.ListAnnotationStoresResponse) => void): Request; /** * Retrieves a list of annotation stores. */ listAnnotationStores(callback?: (err: AWSError, data: Omics.Types.ListAnnotationStoresResponse) => void): Request; /** * Lists all multipart read set uploads and their statuses. */ listMultipartReadSetUploads(params: Omics.Types.ListMultipartReadSetUploadsRequest, callback?: (err: AWSError, data: Omics.Types.ListMultipartReadSetUploadsResponse) => void): Request; /** * Lists all multipart read set uploads and their statuses. */ listMultipartReadSetUploads(callback?: (err: AWSError, data: Omics.Types.ListMultipartReadSetUploadsResponse) => void): Request; /** * Retrieves a list of read set activation jobs. */ listReadSetActivationJobs(params: Omics.Types.ListReadSetActivationJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListReadSetActivationJobsResponse) => void): Request; /** * Retrieves a list of read set activation jobs. */ listReadSetActivationJobs(callback?: (err: AWSError, data: Omics.Types.ListReadSetActivationJobsResponse) => void): Request; /** * Retrieves a list of read set export jobs. */ listReadSetExportJobs(params: Omics.Types.ListReadSetExportJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListReadSetExportJobsResponse) => void): Request; /** * Retrieves a list of read set export jobs. */ listReadSetExportJobs(callback?: (err: AWSError, data: Omics.Types.ListReadSetExportJobsResponse) => void): Request; /** * Retrieves a list of read set import jobs. */ listReadSetImportJobs(params: Omics.Types.ListReadSetImportJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListReadSetImportJobsResponse) => void): Request; /** * Retrieves a list of read set import jobs. */ listReadSetImportJobs(callback?: (err: AWSError, data: Omics.Types.ListReadSetImportJobsResponse) => void): Request; /** * This operation will list all parts in a requested multipart upload for a sequence store. */ listReadSetUploadParts(params: Omics.Types.ListReadSetUploadPartsRequest, callback?: (err: AWSError, data: Omics.Types.ListReadSetUploadPartsResponse) => void): Request; /** * This operation will list all parts in a requested multipart upload for a sequence store. */ listReadSetUploadParts(callback?: (err: AWSError, data: Omics.Types.ListReadSetUploadPartsResponse) => void): Request; /** * Retrieves a list of read sets. */ listReadSets(params: Omics.Types.ListReadSetsRequest, callback?: (err: AWSError, data: Omics.Types.ListReadSetsResponse) => void): Request; /** * Retrieves a list of read sets. */ listReadSets(callback?: (err: AWSError, data: Omics.Types.ListReadSetsResponse) => void): Request; /** * Retrieves a list of reference import jobs. */ listReferenceImportJobs(params: Omics.Types.ListReferenceImportJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListReferenceImportJobsResponse) => void): Request; /** * Retrieves a list of reference import jobs. */ listReferenceImportJobs(callback?: (err: AWSError, data: Omics.Types.ListReferenceImportJobsResponse) => void): Request; /** * Retrieves a list of reference stores. */ listReferenceStores(params: Omics.Types.ListReferenceStoresRequest, callback?: (err: AWSError, data: Omics.Types.ListReferenceStoresResponse) => void): Request; /** * Retrieves a list of reference stores. */ listReferenceStores(callback?: (err: AWSError, data: Omics.Types.ListReferenceStoresResponse) => void): Request; /** * Retrieves a list of references. */ listReferences(params: Omics.Types.ListReferencesRequest, callback?: (err: AWSError, data: Omics.Types.ListReferencesResponse) => void): Request; /** * Retrieves a list of references. */ listReferences(callback?: (err: AWSError, data: Omics.Types.ListReferencesResponse) => void): Request; /** * Retrieves a list of run groups. */ listRunGroups(params: Omics.Types.ListRunGroupsRequest, callback?: (err: AWSError, data: Omics.Types.ListRunGroupsResponse) => void): Request; /** * Retrieves a list of run groups. */ listRunGroups(callback?: (err: AWSError, data: Omics.Types.ListRunGroupsResponse) => void): Request; /** * Retrieves a list of tasks for a run. */ listRunTasks(params: Omics.Types.ListRunTasksRequest, callback?: (err: AWSError, data: Omics.Types.ListRunTasksResponse) => void): Request; /** * Retrieves a list of tasks for a run. */ listRunTasks(callback?: (err: AWSError, data: Omics.Types.ListRunTasksResponse) => void): Request; /** * Retrieves a list of runs. */ listRuns(params: Omics.Types.ListRunsRequest, callback?: (err: AWSError, data: Omics.Types.ListRunsResponse) => void): Request; /** * Retrieves a list of runs. */ listRuns(callback?: (err: AWSError, data: Omics.Types.ListRunsResponse) => void): Request; /** * Retrieves a list of sequence stores. */ listSequenceStores(params: Omics.Types.ListSequenceStoresRequest, callback?: (err: AWSError, data: Omics.Types.ListSequenceStoresResponse) => void): Request; /** * Retrieves a list of sequence stores. */ listSequenceStores(callback?: (err: AWSError, data: Omics.Types.ListSequenceStoresResponse) => void): Request; /** * Retrieves a list of tags for a resource. */ listTagsForResource(params: Omics.Types.ListTagsForResourceRequest, callback?: (err: AWSError, data: Omics.Types.ListTagsForResourceResponse) => void): Request; /** * Retrieves a list of tags for a resource. */ listTagsForResource(callback?: (err: AWSError, data: Omics.Types.ListTagsForResourceResponse) => void): Request; /** * Retrieves a list of variant import jobs. */ listVariantImportJobs(params: Omics.Types.ListVariantImportJobsRequest, callback?: (err: AWSError, data: Omics.Types.ListVariantImportJobsResponse) => void): Request; /** * Retrieves a list of variant import jobs. */ listVariantImportJobs(callback?: (err: AWSError, data: Omics.Types.ListVariantImportJobsResponse) => void): Request; /** * Retrieves a list of variant stores. */ listVariantStores(params: Omics.Types.ListVariantStoresRequest, callback?: (err: AWSError, data: Omics.Types.ListVariantStoresResponse) => void): Request; /** * Retrieves a list of variant stores. */ listVariantStores(callback?: (err: AWSError, data: Omics.Types.ListVariantStoresResponse) => void): Request; /** * Retrieves a list of workflows. */ listWorkflows(params: Omics.Types.ListWorkflowsRequest, callback?: (err: AWSError, data: Omics.Types.ListWorkflowsResponse) => void): Request; /** * Retrieves a list of workflows. */ listWorkflows(callback?: (err: AWSError, data: Omics.Types.ListWorkflowsResponse) => void): Request; /** * Starts an annotation import job. */ startAnnotationImportJob(params: Omics.Types.StartAnnotationImportRequest, callback?: (err: AWSError, data: Omics.Types.StartAnnotationImportResponse) => void): Request; /** * Starts an annotation import job. */ startAnnotationImportJob(callback?: (err: AWSError, data: Omics.Types.StartAnnotationImportResponse) => void): Request; /** * Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days. */ startReadSetActivationJob(params: Omics.Types.StartReadSetActivationJobRequest, callback?: (err: AWSError, data: Omics.Types.StartReadSetActivationJobResponse) => void): Request; /** * Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days. */ startReadSetActivationJob(callback?: (err: AWSError, data: Omics.Types.StartReadSetActivationJobResponse) => void): Request; /** * Exports a read set to Amazon S3. */ startReadSetExportJob(params: Omics.Types.StartReadSetExportJobRequest, callback?: (err: AWSError, data: Omics.Types.StartReadSetExportJobResponse) => void): Request; /** * Exports a read set to Amazon S3. */ startReadSetExportJob(callback?: (err: AWSError, data: Omics.Types.StartReadSetExportJobResponse) => void): Request; /** * Starts a read set import job. */ startReadSetImportJob(params: Omics.Types.StartReadSetImportJobRequest, callback?: (err: AWSError, data: Omics.Types.StartReadSetImportJobResponse) => void): Request; /** * Starts a read set import job. */ startReadSetImportJob(callback?: (err: AWSError, data: Omics.Types.StartReadSetImportJobResponse) => void): Request; /** * Starts a reference import job. */ startReferenceImportJob(params: Omics.Types.StartReferenceImportJobRequest, callback?: (err: AWSError, data: Omics.Types.StartReferenceImportJobResponse) => void): Request; /** * Starts a reference import job. */ startReferenceImportJob(callback?: (err: AWSError, data: Omics.Types.StartReferenceImportJobResponse) => void): Request; /** * Starts a run. */ startRun(params: Omics.Types.StartRunRequest, callback?: (err: AWSError, data: Omics.Types.StartRunResponse) => void): Request; /** * Starts a run. */ startRun(callback?: (err: AWSError, data: Omics.Types.StartRunResponse) => void): Request; /** * Starts a variant import job. */ startVariantImportJob(params: Omics.Types.StartVariantImportRequest, callback?: (err: AWSError, data: Omics.Types.StartVariantImportResponse) => void): Request; /** * Starts a variant import job. */ startVariantImportJob(callback?: (err: AWSError, data: Omics.Types.StartVariantImportResponse) => void): Request; /** * Tags a resource. */ tagResource(params: Omics.Types.TagResourceRequest, callback?: (err: AWSError, data: Omics.Types.TagResourceResponse) => void): Request; /** * Tags a resource. */ tagResource(callback?: (err: AWSError, data: Omics.Types.TagResourceResponse) => void): Request; /** * Removes tags from a resource. */ untagResource(params: Omics.Types.UntagResourceRequest, callback?: (err: AWSError, data: Omics.Types.UntagResourceResponse) => void): Request; /** * Removes tags from a resource. */ untagResource(callback?: (err: AWSError, data: Omics.Types.UntagResourceResponse) => void): Request; /** * Updates an annotation store. */ updateAnnotationStore(params: Omics.Types.UpdateAnnotationStoreRequest, callback?: (err: AWSError, data: Omics.Types.UpdateAnnotationStoreResponse) => void): Request; /** * Updates an annotation store. */ updateAnnotationStore(callback?: (err: AWSError, data: Omics.Types.UpdateAnnotationStoreResponse) => void): Request; /** * Updates a run group. */ updateRunGroup(params: Omics.Types.UpdateRunGroupRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Updates a run group. */ updateRunGroup(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Updates a variant store. */ updateVariantStore(params: Omics.Types.UpdateVariantStoreRequest, callback?: (err: AWSError, data: Omics.Types.UpdateVariantStoreResponse) => void): Request; /** * Updates a variant store. */ updateVariantStore(callback?: (err: AWSError, data: Omics.Types.UpdateVariantStoreResponse) => void): Request; /** * Updates a workflow. */ updateWorkflow(params: Omics.Types.UpdateWorkflowRequest, callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * Updates a workflow. */ updateWorkflow(callback?: (err: AWSError, data: {}) => void): Request<{}, AWSError>; /** * This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten. */ uploadReadSetPart(params: Omics.Types.UploadReadSetPartRequest, callback?: (err: AWSError, data: Omics.Types.UploadReadSetPartResponse) => void): Request; /** * This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten. */ uploadReadSetPart(callback?: (err: AWSError, data: Omics.Types.UploadReadSetPartResponse) => void): Request; /** * Waits for the annotationImportJobCreated state by periodically calling the underlying Omics.getAnnotationImportJoboperation every 30 seconds (at most 20 times). Wait until an annotation import is completed */ waitFor(state: "annotationImportJobCreated", params: Omics.Types.GetAnnotationImportRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetAnnotationImportResponse) => void): Request; /** * Waits for the annotationImportJobCreated state by periodically calling the underlying Omics.getAnnotationImportJoboperation every 30 seconds (at most 20 times). Wait until an annotation import is completed */ waitFor(state: "annotationImportJobCreated", callback?: (err: AWSError, data: Omics.Types.GetAnnotationImportResponse) => void): Request; /** * Waits for the annotationStoreCreated state by periodically calling the underlying Omics.getAnnotationStoreoperation every 30 seconds (at most 20 times). Wait until an annotation store is created */ waitFor(state: "annotationStoreCreated", params: Omics.Types.GetAnnotationStoreRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Waits for the annotationStoreCreated state by periodically calling the underlying Omics.getAnnotationStoreoperation every 30 seconds (at most 20 times). Wait until an annotation store is created */ waitFor(state: "annotationStoreCreated", callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Waits for the annotationStoreDeleted state by periodically calling the underlying Omics.getAnnotationStoreoperation every 30 seconds (at most 20 times). Wait until an annotation store is deleted. */ waitFor(state: "annotationStoreDeleted", params: Omics.Types.GetAnnotationStoreRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Waits for the annotationStoreDeleted state by periodically calling the underlying Omics.getAnnotationStoreoperation every 30 seconds (at most 20 times). Wait until an annotation store is deleted. */ waitFor(state: "annotationStoreDeleted", callback?: (err: AWSError, data: Omics.Types.GetAnnotationStoreResponse) => void): Request; /** * Waits for the readSetActivationJobCompleted state by periodically calling the underlying Omics.getReadSetActivationJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetActivationJobCompleted", params: Omics.Types.GetReadSetActivationJobRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetReadSetActivationJobResponse) => void): Request; /** * Waits for the readSetActivationJobCompleted state by periodically calling the underlying Omics.getReadSetActivationJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetActivationJobCompleted", callback?: (err: AWSError, data: Omics.Types.GetReadSetActivationJobResponse) => void): Request; /** * Waits for the readSetExportJobCompleted state by periodically calling the underlying Omics.getReadSetExportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetExportJobCompleted", params: Omics.Types.GetReadSetExportJobRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetReadSetExportJobResponse) => void): Request; /** * Waits for the readSetExportJobCompleted state by periodically calling the underlying Omics.getReadSetExportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetExportJobCompleted", callback?: (err: AWSError, data: Omics.Types.GetReadSetExportJobResponse) => void): Request; /** * Waits for the readSetImportJobCompleted state by periodically calling the underlying Omics.getReadSetImportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetImportJobCompleted", params: Omics.Types.GetReadSetImportJobRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetReadSetImportJobResponse) => void): Request; /** * Waits for the readSetImportJobCompleted state by periodically calling the underlying Omics.getReadSetImportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "readSetImportJobCompleted", callback?: (err: AWSError, data: Omics.Types.GetReadSetImportJobResponse) => void): Request; /** * Waits for the referenceImportJobCompleted state by periodically calling the underlying Omics.getReferenceImportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "referenceImportJobCompleted", params: Omics.Types.GetReferenceImportJobRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetReferenceImportJobResponse) => void): Request; /** * Waits for the referenceImportJobCompleted state by periodically calling the underlying Omics.getReferenceImportJoboperation every 30 seconds (at most 20 times). Wait until a job is completed. */ waitFor(state: "referenceImportJobCompleted", callback?: (err: AWSError, data: Omics.Types.GetReferenceImportJobResponse) => void): Request; /** * Waits for the runCompleted state by periodically calling the underlying Omics.getRunoperation every 30 seconds (at most 20 times). Wait until a run is completed. */ waitFor(state: "runCompleted", params: Omics.Types.GetRunRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Waits for the runCompleted state by periodically calling the underlying Omics.getRunoperation every 30 seconds (at most 20 times). Wait until a run is completed. */ waitFor(state: "runCompleted", callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Waits for the runRunning state by periodically calling the underlying Omics.getRunoperation every 30 seconds (at most 20 times). Wait until a run is running. */ waitFor(state: "runRunning", params: Omics.Types.GetRunRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Waits for the runRunning state by periodically calling the underlying Omics.getRunoperation every 30 seconds (at most 20 times). Wait until a run is running. */ waitFor(state: "runRunning", callback?: (err: AWSError, data: Omics.Types.GetRunResponse) => void): Request; /** * Waits for the taskCompleted state by periodically calling the underlying Omics.getRunTaskoperation every 30 seconds (at most 20 times). Wait until a task is completed. */ waitFor(state: "taskCompleted", params: Omics.Types.GetRunTaskRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Waits for the taskCompleted state by periodically calling the underlying Omics.getRunTaskoperation every 30 seconds (at most 20 times). Wait until a task is completed. */ waitFor(state: "taskCompleted", callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Waits for the taskRunning state by periodically calling the underlying Omics.getRunTaskoperation every 30 seconds (at most 20 times). Wait until a task is running. */ waitFor(state: "taskRunning", params: Omics.Types.GetRunTaskRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Waits for the taskRunning state by periodically calling the underlying Omics.getRunTaskoperation every 30 seconds (at most 20 times). Wait until a task is running. */ waitFor(state: "taskRunning", callback?: (err: AWSError, data: Omics.Types.GetRunTaskResponse) => void): Request; /** * Waits for the variantImportJobCreated state by periodically calling the underlying Omics.getVariantImportJoboperation every 30 seconds (at most 20 times). Wait until variant import is completed */ waitFor(state: "variantImportJobCreated", params: Omics.Types.GetVariantImportRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetVariantImportResponse) => void): Request; /** * Waits for the variantImportJobCreated state by periodically calling the underlying Omics.getVariantImportJoboperation every 30 seconds (at most 20 times). Wait until variant import is completed */ waitFor(state: "variantImportJobCreated", callback?: (err: AWSError, data: Omics.Types.GetVariantImportResponse) => void): Request; /** * Waits for the variantStoreCreated state by periodically calling the underlying Omics.getVariantStoreoperation every 30 seconds (at most 20 times). Wait until a variant store is created */ waitFor(state: "variantStoreCreated", params: Omics.Types.GetVariantStoreRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Waits for the variantStoreCreated state by periodically calling the underlying Omics.getVariantStoreoperation every 30 seconds (at most 20 times). Wait until a variant store is created */ waitFor(state: "variantStoreCreated", callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Waits for the variantStoreDeleted state by periodically calling the underlying Omics.getVariantStoreoperation every 30 seconds (at most 20 times). Wait until a variant store is deleted. */ waitFor(state: "variantStoreDeleted", params: Omics.Types.GetVariantStoreRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Waits for the variantStoreDeleted state by periodically calling the underlying Omics.getVariantStoreoperation every 30 seconds (at most 20 times). Wait until a variant store is deleted. */ waitFor(state: "variantStoreDeleted", callback?: (err: AWSError, data: Omics.Types.GetVariantStoreResponse) => void): Request; /** * Waits for the workflowActive state by periodically calling the underlying Omics.getWorkflowoperation every 3 seconds (at most 10 times). Wait until a workflow is active. */ waitFor(state: "workflowActive", params: Omics.Types.GetWorkflowRequest & {$waiter?: WaiterConfiguration}, callback?: (err: AWSError, data: Omics.Types.GetWorkflowResponse) => void): Request; /** * Waits for the workflowActive state by periodically calling the underlying Omics.getWorkflowoperation every 3 seconds (at most 10 times). Wait until a workflow is active. */ waitFor(state: "workflowActive", callback?: (err: AWSError, data: Omics.Types.GetWorkflowResponse) => void): Request; } declare namespace Omics { export interface AbortMultipartReadSetUploadRequest { /** * The sequence store ID for the store involved in the multipart upload. */ sequenceStoreId: SequenceStoreId; /** * The ID for the multipart upload. */ uploadId: UploadId; } export interface AbortMultipartReadSetUploadResponse { } export type Accelerators = "GPU"|string; export interface ActivateReadSetFilter { /** * The filter's status. */ status?: ReadSetActivationJobStatus; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export interface ActivateReadSetJobItem { /** * The job's ID. */ id: ActivationJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's status. */ status: ReadSetActivationJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; } export type ActivateReadSetJobList = ActivateReadSetJobItem[]; export interface ActivateReadSetSourceItem { /** * The source's read set ID. */ readSetId: ReadSetId; /** * The source's status. */ status: ReadSetActivationJobItemStatus; /** * The source's status message. */ statusMessage?: JobStatusMessage; } export type ActivateReadSetSourceList = ActivateReadSetSourceItem[]; export type ActivationJobId = string; export type AnnotationFieldMap = {[key: string]: AnnotationFieldMapValueString}; export type AnnotationFieldMapKeyString = string; export type AnnotationFieldMapValueString = string; export interface AnnotationImportItemDetail { /** * The source file's location in Amazon S3. */ source: S3Uri; /** * The item's job status. */ jobStatus: JobStatus; } export type AnnotationImportItemDetails = AnnotationImportItemDetail[]; export interface AnnotationImportItemSource { /** * The source file's location in Amazon S3. */ source: S3Uri; } export type AnnotationImportItemSources = AnnotationImportItemSource[]; export interface AnnotationImportJobItem { /** * The job's ID. */ id: String; /** * The job's destination annotation store. */ destinationName: String; /** * The job's service role ARN. */ roleArn: Arn; /** * The job's status. */ status: JobStatus; /** * When the job was created. */ creationTime: CreationTime; /** * When the job was updated. */ updateTime: UpdateTime; /** * When the job completed. */ completionTime?: CompletionTime; /** * The job's left normalization setting. */ runLeftNormalization?: RunLeftNormalization; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export type AnnotationImportJobItems = AnnotationImportJobItem[]; export interface AnnotationStoreItem { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's ARN. */ storeArn: Arn; /** * The store's name. */ name: String; /** * The store's file format. */ storeFormat: StoreFormat; /** * The store's description. */ description: StoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig: SseConfig; /** * The store's creation time. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; /** * The store's status message. */ statusMessage: StatusMessage; /** * The store's size in bytes. */ storeSizeBytes: Long; } export type AnnotationStoreItems = AnnotationStoreItem[]; export type AnnotationType = "GENERIC"|"CHR_POS"|"CHR_POS_REF_ALT"|"CHR_START_END_ONE_BASE"|"CHR_START_END_REF_ALT_ONE_BASE"|"CHR_START_END_ZERO_BASE"|"CHR_START_END_REF_ALT_ZERO_BASE"|string; export type Arn = string; export interface BatchDeleteReadSetRequest { /** * The read sets' IDs. */ ids: ReadSetIdList; /** * The read sets' sequence store ID. */ sequenceStoreId: SequenceStoreId; } export interface BatchDeleteReadSetResponse { /** * Errors returned by individual delete operations. */ errors?: ReadSetBatchErrorList; } export type _Blob = Buffer|Uint8Array|Blob|string; export type Boolean = boolean; export interface CancelAnnotationImportRequest { /** * The job's ID. */ jobId: ResourceId; } export interface CancelAnnotationImportResponse { } export interface CancelRunRequest { /** * The run's ID. */ id: RunId; } export interface CancelVariantImportRequest { /** * The job's ID. */ jobId: ResourceId; } export interface CancelVariantImportResponse { } export type ClientToken = string; export type CommentChar = string; export interface CompleteMultipartReadSetUploadRequest { /** * The sequence store ID for the store involved in the multipart upload. */ sequenceStoreId: SequenceStoreId; /** * The ID for the multipart upload. */ uploadId: UploadId; /** * The individual uploads or parts of a multipart upload. */ parts: CompleteReadSetUploadPartList; } export interface CompleteMultipartReadSetUploadResponse { /** * The read set ID created for an uploaded read set. */ readSetId: ReadSetId; } export type CompleteReadSetUploadPartList = CompleteReadSetUploadPartListItem[]; export interface CompleteReadSetUploadPartListItem { /** * A number identifying the part in a read set upload. */ partNumber: CompleteReadSetUploadPartListItemPartNumberInteger; /** * The source file of the part being uploaded. */ partSource: ReadSetPartSource; /** * A unique identifier used to confirm that parts are being added to the correct upload. */ checksum: String; } export type CompleteReadSetUploadPartListItemPartNumberInteger = number; export type CompletionTime = Date; export interface CreateAnnotationStoreRequest { /** * The genome reference for the store's annotations. */ reference?: ReferenceItem; /** * A name for the store. */ name?: CreateAnnotationStoreRequestNameString; /** * A description for the store. */ description?: StoreDescription; /** * Tags for the store. */ tags?: TagMap; /** * Server-side encryption (SSE) settings for the store. */ sseConfig?: SseConfig; /** * The annotation file format of the store. */ storeFormat: StoreFormat; /** * File parsing options for the annotation store. */ storeOptions?: StoreOptions; } export type CreateAnnotationStoreRequestNameString = string; export interface CreateAnnotationStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. Required for all stores except TSV format with generic annotations. */ reference?: ReferenceItem; /** * The annotation file format of the store. */ storeFormat?: StoreFormat; /** * The store's file parsing options. */ storeOptions?: StoreOptions; /** * The store's status. */ status: StoreStatus; /** * The store's name. */ name: String; /** * When the store was created. */ creationTime: CreationTime; } export interface CreateMultipartReadSetUploadRequest { /** * The sequence store ID for the store that is the destination of the multipart uploads. */ sequenceStoreId: SequenceStoreId; /** * An idempotency token that can be used to avoid triggering multiple multipart uploads. */ clientToken?: ClientToken; /** * The type of file being uploaded. */ sourceFileType: FileType; /** * The source's subject ID. */ subjectId: SubjectId; /** * The source's sample ID. */ sampleId: SampleId; /** * Where the source originated. */ generatedFrom?: GeneratedFrom; /** * The ARN of the reference. */ referenceArn: ReferenceArn; /** * The name of the read set. */ name: ReadSetName; /** * The description of the read set. */ description?: ReadSetDescription; /** * Any tags to add to the read set. */ tags?: TagMap; } export interface CreateMultipartReadSetUploadResponse { /** * The sequence store ID for the store that the read set will be created in. */ sequenceStoreId: SequenceStoreId; /** * he ID for the initiated multipart upload. */ uploadId: UploadId; /** * The file type of the read set source. */ sourceFileType: FileType; /** * The source's subject ID. */ subjectId: SubjectId; /** * The source's sample ID. */ sampleId: SampleId; /** * The source of the read set. */ generatedFrom?: GeneratedFrom; /** * The read set source's reference ARN. */ referenceArn: ReferenceArn; /** * The name of the read set. */ name?: ReadSetName; /** * The description of the read set. */ description?: ReadSetDescription; /** * The tags to add to the read set. */ tags?: TagMap; /** * The creation time of the multipart upload. */ creationTime: SyntheticTimestamp_date_time; } export interface CreateReferenceStoreRequest { /** * A name for the store. */ name: ReferenceStoreName; /** * A description for the store. */ description?: ReferenceStoreDescription; /** * Server-side encryption (SSE) settings for the store. */ sseConfig?: SseConfig; /** * Tags for the store. */ tags?: TagMap; /** * To ensure that requests don't run multiple times, specify a unique token for each request. */ clientToken?: ClientToken; } export interface CreateReferenceStoreResponse { /** * The store's ID. */ id: ReferenceStoreId; /** * The store's ARN. */ arn: ReferenceStoreArn; /** * The store's name. */ name?: ReferenceStoreName; /** * The store's description. */ description?: ReferenceStoreDescription; /** * The store's SSE settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; } export interface CreateRunGroupRequest { /** * A name for the group. */ name?: RunGroupName; /** * The maximum number of CPUs to use in the group. */ maxCpus?: CreateRunGroupRequestMaxCpusInteger; /** * The maximum number of concurrent runs for the group. */ maxRuns?: CreateRunGroupRequestMaxRunsInteger; /** * A maximum run time for the group in minutes. */ maxDuration?: CreateRunGroupRequestMaxDurationInteger; /** * Tags for the group. */ tags?: TagMap; /** * To ensure that requests don't run multiple times, specify a unique ID for each request. */ requestId: RunGroupRequestId; /** * The maximum GPUs that can be used by a run group. */ maxGpus?: CreateRunGroupRequestMaxGpusInteger; } export type CreateRunGroupRequestMaxCpusInteger = number; export type CreateRunGroupRequestMaxDurationInteger = number; export type CreateRunGroupRequestMaxGpusInteger = number; export type CreateRunGroupRequestMaxRunsInteger = number; export interface CreateRunGroupResponse { /** * The group's ARN. */ arn?: RunGroupArn; /** * The group's ID. */ id?: RunGroupId; /** * Tags for the run group. */ tags?: TagMap; } export interface CreateSequenceStoreRequest { /** * A name for the store. */ name: SequenceStoreName; /** * A description for the store. */ description?: SequenceStoreDescription; /** * Server-side encryption (SSE) settings for the store. */ sseConfig?: SseConfig; /** * Tags for the store. */ tags?: TagMap; /** * To ensure that requests don't run multiple times, specify a unique token for each request. */ clientToken?: ClientToken; /** * An S3 location that is used to store files that have failed a direct upload. */ fallbackLocation?: S3Destination; } export interface CreateSequenceStoreResponse { /** * The store's ID. */ id: SequenceStoreId; /** * The store's ARN. */ arn: SequenceStoreArn; /** * The store's name. */ name?: SequenceStoreName; /** * The store's description. */ description?: SequenceStoreDescription; /** * The store's SSE settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; /** * An S3 location that is used to store files that have failed a direct upload. */ fallbackLocation?: S3Destination; } export interface CreateVariantStoreRequest { /** * The genome reference for the store's variants. */ reference: ReferenceItem; /** * A name for the store. */ name?: CreateVariantStoreRequestNameString; /** * A description for the store. */ description?: StoreDescription; /** * Tags for the store. */ tags?: TagMap; /** * Server-side encryption (SSE) settings for the store. */ sseConfig?: SseConfig; } export type CreateVariantStoreRequestNameString = string; export interface CreateVariantStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference?: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's name. */ name: String; /** * When the store was created. */ creationTime: CreationTime; } export interface CreateWorkflowRequest { /** * A name for the workflow. */ name?: WorkflowName; /** * A description for the workflow. */ description?: WorkflowDescription; /** * An engine for the workflow. */ engine?: WorkflowEngine; /** * A ZIP archive for the workflow. */ definitionZip?: _Blob; /** * The URI of a definition for the workflow. */ definitionUri?: WorkflowDefinition; /** * The path of the main definition file for the workflow. */ main?: WorkflowMain; /** * A parameter template for the workflow. */ parameterTemplate?: WorkflowParameterTemplate; /** * A storage capacity for the workflow in gigabytes. */ storageCapacity?: CreateWorkflowRequestStorageCapacityInteger; /** * Tags for the workflow. */ tags?: TagMap; /** * To ensure that requests don't run multiple times, specify a unique ID for each request. */ requestId: WorkflowRequestId; /** * The computational accelerator specified to run the workflow. */ accelerators?: Accelerators; } export type CreateWorkflowRequestStorageCapacityInteger = number; export interface CreateWorkflowResponse { /** * The workflow's ARN. */ arn?: WorkflowArn; /** * The workflow's ID. */ id?: WorkflowId; /** * The workflow's status. */ status?: WorkflowStatus; /** * The workflow's tags. */ tags?: TagMap; } export type CreationTime = Date; export interface DeleteAnnotationStoreRequest { /** * The store's name. */ name: String; /** * Whether to force deletion. */ force?: PrimitiveBoolean; } export interface DeleteAnnotationStoreResponse { /** * The store's status. */ status: StoreStatus; } export interface DeleteReferenceRequest { /** * The reference's ID. */ id: ReferenceId; /** * The reference's store ID. */ referenceStoreId: ReferenceStoreId; } export interface DeleteReferenceResponse { } export interface DeleteReferenceStoreRequest { /** * The store's ID. */ id: ReferenceStoreId; } export interface DeleteReferenceStoreResponse { } export interface DeleteRunGroupRequest { /** * The run group's ID. */ id: RunGroupId; } export interface DeleteRunRequest { /** * The run's ID. */ id: RunId; } export interface DeleteSequenceStoreRequest { /** * The sequence store's ID. */ id: SequenceStoreId; } export interface DeleteSequenceStoreResponse { } export interface DeleteVariantStoreRequest { /** * The store's name. */ name: String; /** * Whether to force deletion. */ force?: PrimitiveBoolean; } export interface DeleteVariantStoreResponse { /** * The store's status. */ status: StoreStatus; } export interface DeleteWorkflowRequest { /** * The workflow's ID. */ id: WorkflowId; } export type Encoding = string; export type EncryptionType = "KMS"|string; export type EscapeChar = string; export type EscapeQuotes = boolean; export type ExportJobId = string; export interface ExportReadSet { /** * The set's ID. */ readSetId: ReadSetId; } export interface ExportReadSetDetail { /** * The set's ID. */ id: ReadSetId; /** * The set's status. */ status: ReadSetExportJobItemStatus; /** * The set's status message. */ statusMessage?: JobStatusMessage; } export type ExportReadSetDetailList = ExportReadSetDetail[]; export interface ExportReadSetFilter { /** * A status to filter on. */ status?: ReadSetExportJobStatus; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export interface ExportReadSetJobDetail { /** * The job's ID. */ id: ExportJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's destination in Amazon S3. */ destination: S3Destination; /** * The job's status. */ status: ReadSetExportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; } export type ExportReadSetJobDetailList = ExportReadSetJobDetail[]; export interface FileInformation { /** * The file's total parts. */ totalParts?: FileInformationTotalPartsInteger; /** * The file's part size. */ partSize?: FileInformationPartSizeLong; /** * The file's content length. */ contentLength?: FileInformationContentLengthLong; } export type FileInformationContentLengthLong = number; export type FileInformationPartSizeLong = number; export type FileInformationTotalPartsInteger = number; export type FileType = "FASTQ"|"BAM"|"CRAM"|string; export interface FormatOptions { /** * Options for a TSV file. */ tsvOptions?: TsvOptions; /** * Options for a VCF file. */ vcfOptions?: VcfOptions; } export type FormatToHeader = {[key: string]: FormatToHeaderValueString}; export type FormatToHeaderKey = "CHR"|"START"|"END"|"REF"|"ALT"|"POS"|string; export type FormatToHeaderValueString = string; export type GeneratedFrom = string; export interface GetAnnotationImportRequest { /** * The job's ID. */ jobId: ResourceId; } export interface GetAnnotationImportResponse { /** * The job's ID. */ id: ResourceId; /** * The job's destination annotation store. */ destinationName: StoreName; /** * The job's service role ARN. */ roleArn: Arn; /** * The job's status. */ status: JobStatus; /** * The job's status message. */ statusMessage: JobStatusMsg; /** * When the job was created. */ creationTime: CreationTime; /** * When the job was updated. */ updateTime: UpdateTime; /** * When the job completed. */ completionTime: CompletionTime; /** * The job's imported items. */ items: AnnotationImportItemDetails; /** * The job's left normalization setting. */ runLeftNormalization: RunLeftNormalization; formatOptions: FormatOptions; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export interface GetAnnotationStoreRequest { /** * The store's name. */ name: String; } export interface GetAnnotationStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's ARN. */ storeArn: Arn; /** * The store's name. */ name: String; /** * The store's description. */ description: StoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig: SseConfig; /** * When the store was created. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; /** * The store's tags. */ tags: TagMap; /** * The store's parsing options. */ storeOptions?: StoreOptions; /** * The store's annotation file format. */ storeFormat?: StoreFormat; /** * A status message. */ statusMessage: StatusMessage; /** * The store's size in bytes. */ storeSizeBytes: Long; } export interface GetReadSetActivationJobRequest { /** * The job's ID. */ id: ActivationJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; } export interface GetReadSetActivationJobResponse { /** * The job's ID. */ id: ActivationJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's status. */ status: ReadSetActivationJobStatus; /** * The job's status message. */ statusMessage?: JobStatusMessage; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; /** * The job's source files. */ sources?: ActivateReadSetSourceList; } export interface GetReadSetExportJobRequest { /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's ID. */ id: ExportJobId; } export interface GetReadSetExportJobResponse { /** * The job's ID. */ id: ExportJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's destination in Amazon S3. */ destination: S3Destination; /** * The job's status. */ status: ReadSetExportJobStatus; /** * The job's status message. */ statusMessage?: JobStatusMessage; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; /** * The job's read sets. */ readSets?: ExportReadSetDetailList; } export interface GetReadSetImportJobRequest { /** * The job's ID. */ id: ImportJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; } export interface GetReadSetImportJobResponse { /** * The job's ID. */ id: ImportJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReadSetImportJobStatus; /** * The job's status message. */ statusMessage?: JobStatusMessage; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; /** * The job's source files. */ sources: ImportReadSetSourceList; } export interface GetReadSetMetadataRequest { /** * The read set's ID. */ id: ReadSetId; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; } export interface GetReadSetMetadataResponse { /** * The read set's ID. */ id: ReadSetId; /** * The read set's ARN. */ arn: ReadSetArn; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The read set's subject ID. */ subjectId?: SubjectId; /** * The read set's sample ID. */ sampleId?: SampleId; /** * The read set's status. */ status: ReadSetStatus; /** * The read set's name. */ name?: ReadSetName; /** * The read set's description. */ description?: ReadSetDescription; /** * The read set's file type. */ fileType: FileType; /** * When the read set was created. */ creationTime: SyntheticTimestamp_date_time; /** * The read set's sequence information. */ sequenceInformation?: SequenceInformation; /** * The read set's genome reference ARN. */ referenceArn?: ReferenceArn; /** * The read set's files. */ files?: ReadSetFiles; /** * The status message for a read set. It provides more detail as to why the read set has a status. */ statusMessage?: ReadSetStatusMessage; } export interface GetReadSetRequest { /** * The read set's ID. */ id: ReadSetId; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The file to retrieve. */ file?: ReadSetFile; /** * The part number to retrieve. */ partNumber: GetReadSetRequestPartNumberInteger; } export type GetReadSetRequestPartNumberInteger = number; export interface GetReadSetResponse { /** * The read set file payload. */ payload?: ReadSetStreamingBlob; } export interface GetReferenceImportJobRequest { /** * The job's ID. */ id: ImportJobId; /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; } export interface GetReferenceImportJobResponse { /** * The job's ID. */ id: ImportJobId; /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReferenceImportJobStatus; /** * The job's status message. */ statusMessage?: JobStatusMessage; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; /** * The job's source files. */ sources: ImportReferenceSourceList; } export interface GetReferenceMetadataRequest { /** * The reference's ID. */ id: ReferenceId; /** * The reference's reference store ID. */ referenceStoreId: ReferenceStoreId; } export interface GetReferenceMetadataResponse { /** * The reference's ID. */ id: ReferenceId; /** * The reference's ARN. */ arn: ReferenceArn; /** * The reference's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * The reference's MD5 checksum. */ md5: Md5; /** * The reference's status. */ status?: ReferenceStatus; /** * The reference's name. */ name?: ReferenceName; /** * The reference's description. */ description?: ReferenceDescription; /** * When the reference was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the reference was updated. */ updateTime: SyntheticTimestamp_date_time; /** * The reference's files. */ files?: ReferenceFiles; } export interface GetReferenceRequest { /** * The reference's ID. */ id: ReferenceId; /** * The reference's store ID. */ referenceStoreId: ReferenceStoreId; /** * The range to retrieve. */ range?: Range; /** * The part number to retrieve. */ partNumber: GetReferenceRequestPartNumberInteger; /** * The file to retrieve. */ file?: ReferenceFile; } export type GetReferenceRequestPartNumberInteger = number; export interface GetReferenceResponse { /** * The reference file payload. */ payload?: ReferenceStreamingBlob; } export interface GetReferenceStoreRequest { /** * The store's ID. */ id: ReferenceStoreId; } export interface GetReferenceStoreResponse { /** * The store's ID. */ id: ReferenceStoreId; /** * The store's ARN. */ arn: ReferenceStoreArn; /** * The store's name. */ name?: ReferenceStoreName; /** * The store's description. */ description?: ReferenceStoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; } export interface GetRunGroupRequest { /** * The group's ID. */ id: RunGroupId; } export interface GetRunGroupResponse { /** * The group's ARN. */ arn?: RunGroupArn; /** * The group's ID. */ id?: RunGroupId; /** * The group's name. */ name?: RunGroupName; /** * The group's maximum number of CPUs to use. */ maxCpus?: GetRunGroupResponseMaxCpusInteger; /** * The maximum number of concurrent runs for the group. */ maxRuns?: GetRunGroupResponseMaxRunsInteger; /** * The group's maximum run time in minutes. */ maxDuration?: GetRunGroupResponseMaxDurationInteger; /** * When the group was created. */ creationTime?: RunGroupTimestamp; /** * The group's tags. */ tags?: TagMap; /** * The maximum GPUs that can be used by a run group. */ maxGpus?: GetRunGroupResponseMaxGpusInteger; } export type GetRunGroupResponseMaxCpusInteger = number; export type GetRunGroupResponseMaxDurationInteger = number; export type GetRunGroupResponseMaxGpusInteger = number; export type GetRunGroupResponseMaxRunsInteger = number; export interface GetRunRequest { /** * The run's ID. */ id: RunId; /** * The run's export format. */ export?: RunExportList; } export interface GetRunResponse { /** * The run's ARN. */ arn?: RunArn; /** * The run's ID. */ id?: RunId; /** * The run's status. */ status?: RunStatus; /** * The run's workflow ID. */ workflowId?: WorkflowId; /** * The run's workflow type. */ workflowType?: WorkflowType; /** * The run's ID. */ runId?: RunId; /** * The run's service role ARN. */ roleArn?: RunRoleArn; /** * The run's name. */ name?: RunName; /** * The run's group ID. */ runGroupId?: RunGroupId; /** * The run's priority. */ priority?: GetRunResponsePriorityInteger; /** * The run's definition. */ definition?: WorkflowDefinition; /** * The run's digest. */ digest?: WorkflowDigest; /** * The run's parameters. */ parameters?: RunParameters; /** * The run's storage capacity in gigabytes. */ storageCapacity?: GetRunResponseStorageCapacityInteger; /** * The run's output URI. */ outputUri?: RunOutputUri; /** * The run's log level. */ logLevel?: RunLogLevel; /** * The run's resource digests. */ resourceDigests?: RunResourceDigests; /** * Who started the run. */ startedBy?: RunStartedBy; /** * When the run was created. */ creationTime?: RunTimestamp; /** * When the run started. */ startTime?: RunTimestamp; /** * The run's stop time. */ stopTime?: RunTimestamp; /** * The run's status message. */ statusMessage?: RunStatusMessage; /** * The run's tags. */ tags?: TagMap; /** * The computational accelerator used to run the workflow. */ accelerators?: Accelerators; } export type GetRunResponsePriorityInteger = number; export type GetRunResponseStorageCapacityInteger = number; export interface GetRunTaskRequest { /** * The task's ID. */ id: RunId; /** * The task's ID. */ taskId: TaskId; } export interface GetRunTaskResponse { /** * The task's ID. */ taskId?: TaskId; /** * The task's status. */ status?: TaskStatus; /** * The task's name. */ name?: TaskName; /** * The task's CPU usage. */ cpus?: GetRunTaskResponseCpusInteger; /** * The task's memory use in gigabytes. */ memory?: GetRunTaskResponseMemoryInteger; /** * When the task was created. */ creationTime?: TaskTimestamp; /** * The task's start time. */ startTime?: TaskTimestamp; /** * The task's stop time. */ stopTime?: TaskTimestamp; /** * The task's status message. */ statusMessage?: TaskStatusMessage; /** * The task's log stream. */ logStream?: TaskLogStream; /** * The number of Graphics Processing Units (GPU) specified in the task. */ gpus?: GetRunTaskResponseGpusInteger; } export type GetRunTaskResponseCpusInteger = number; export type GetRunTaskResponseGpusInteger = number; export type GetRunTaskResponseMemoryInteger = number; export interface GetSequenceStoreRequest { /** * The store's ID. */ id: SequenceStoreId; } export interface GetSequenceStoreResponse { /** * The store's ID. */ id: SequenceStoreId; /** * The store's ARN. */ arn: SequenceStoreArn; /** * The store's name. */ name?: SequenceStoreName; /** * The store's description. */ description?: SequenceStoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; /** * An S3 location that is used to store files that have failed a direct upload. */ fallbackLocation?: S3Destination; } export interface GetVariantImportRequest { /** * The job's ID. */ jobId: ResourceId; } export interface GetVariantImportResponse { /** * The job's ID. */ id: ResourceId; /** * The job's destination variant store. */ destinationName: StoreName; /** * The job's service role ARN. */ roleArn: Arn; /** * The job's status. */ status: JobStatus; /** * The job's status message. */ statusMessage: JobStatusMsg; /** * When the job was created. */ creationTime: CreationTime; /** * When the job was updated. */ updateTime: UpdateTime; /** * When the job completed. */ completionTime?: CompletionTime; /** * The job's items. */ items: VariantImportItemDetails; /** * The job's left normalization setting. */ runLeftNormalization: RunLeftNormalization; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export interface GetVariantStoreRequest { /** * The store's name. */ name: String; } export interface GetVariantStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's ARN. */ storeArn: Arn; /** * The store's name. */ name: String; /** * The store's description. */ description: StoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig: SseConfig; /** * When the store was created. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; /** * The store's tags. */ tags: TagMap; /** * The store's status message. */ statusMessage: StatusMessage; /** * The store's size in bytes. */ storeSizeBytes: Long; } export interface GetWorkflowRequest { /** * The workflow's ID. */ id: WorkflowId; /** * The workflow's type. */ type?: WorkflowType; /** * The export format for the workflow. */ export?: WorkflowExportList; } export interface GetWorkflowResponse { /** * The workflow's ARN. */ arn?: WorkflowArn; /** * The workflow's ID. */ id?: WorkflowId; /** * The workflow's status. */ status?: WorkflowStatus; /** * The workflow's type. */ type?: WorkflowType; /** * The workflow's name. */ name?: WorkflowName; /** * The workflow's description. */ description?: WorkflowDescription; /** * The workflow's engine. */ engine?: WorkflowEngine; /** * The workflow's definition. */ definition?: WorkflowDefinition; /** * The path of the main definition file for the workflow. */ main?: WorkflowMain; /** * The workflow's digest. */ digest?: WorkflowDigest; /** * The workflow's parameter template. */ parameterTemplate?: WorkflowParameterTemplate; /** * The workflow's storage capacity in gigabytes. */ storageCapacity?: GetWorkflowResponseStorageCapacityInteger; /** * When the workflow was created. */ creationTime?: WorkflowTimestamp; /** * The workflow's status message. */ statusMessage?: WorkflowStatusMessage; /** * The workflow's tags. */ tags?: TagMap; /** * Gets metadata for workflow. */ metadata?: WorkflowMetadata; /** * The computational accelerator specified to run the workflow. */ accelerators?: Accelerators; } export type GetWorkflowResponseStorageCapacityInteger = number; export type Header = boolean; export type ImportJobId = string; export interface ImportReadSetFilter { /** * A status to filter on. */ status?: ReadSetImportJobStatus; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export interface ImportReadSetJobItem { /** * The job's ID. */ id: ImportJobId; /** * The job's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReadSetImportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; } export type ImportReadSetJobList = ImportReadSetJobItem[]; export interface ImportReadSetSourceItem { /** * The source files' location in Amazon S3. */ sourceFiles: SourceFiles; /** * The source's file type. */ sourceFileType: FileType; /** * The source's status. */ status: ReadSetImportJobItemStatus; /** * The source's status message. */ statusMessage?: JobStatusMessage; /** * The source's subject ID. */ subjectId: SubjectId; /** * The source's sample ID. */ sampleId: SampleId; /** * Where the source originated. */ generatedFrom?: GeneratedFrom; /** * The source's genome reference ARN. */ referenceArn?: ReferenceArn; /** * The source's name. */ name?: ReadSetName; /** * The source's description. */ description?: ReadSetDescription; /** * The source's tags. */ tags?: TagMap; } export type ImportReadSetSourceList = ImportReadSetSourceItem[]; export interface ImportReferenceFilter { /** * A status to filter on. */ status?: ReferenceImportJobStatus; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export interface ImportReferenceJobItem { /** * The job's ID. */ id: ImportJobId; /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReferenceImportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the job completed. */ completionTime?: SyntheticTimestamp_date_time; } export type ImportReferenceJobList = ImportReferenceJobItem[]; export interface ImportReferenceSourceItem { /** * The source file's location in Amazon S3. */ sourceFile?: S3Uri; /** * The source's status. */ status: ReferenceImportJobItemStatus; /** * The source's status message. */ statusMessage?: JobStatusMessage; /** * The source's name. */ name?: ReferenceName; /** * The source's description. */ description?: ReferenceDescription; /** * The source's tags. */ tags?: TagMap; } export type ImportReferenceSourceList = ImportReferenceSourceItem[]; export type JobStatus = "SUBMITTED"|"IN_PROGRESS"|"CANCELLED"|"COMPLETED"|"FAILED"|"COMPLETED_WITH_FAILURES"|string; export type JobStatusMessage = string; export type JobStatusMsg = string; export type LineSep = string; export interface ListAnnotationImportJobsFilter { /** * A status to filter on. */ status?: JobStatus; /** * A store name to filter on. */ storeName?: String; } export interface ListAnnotationImportJobsRequest { /** * The maximum number of jobs to return in one page of results. */ maxResults?: ListAnnotationImportJobsRequestMaxResultsInteger; /** * IDs of annotation import jobs to retrieve. */ ids?: ListAnnotationImportJobsRequestIdsList; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: ListAnnotationImportJobsRequestNextTokenString; /** * A filter to apply to the list. */ filter?: ListAnnotationImportJobsFilter; } export type ListAnnotationImportJobsRequestIdsList = ResourceIdentifier[]; export type ListAnnotationImportJobsRequestMaxResultsInteger = number; export type ListAnnotationImportJobsRequestNextTokenString = string; export interface ListAnnotationImportJobsResponse { /** * A list of jobs. */ annotationImportJobs?: AnnotationImportJobItems; /** * A pagination token that's included if more results are available. */ nextToken?: String; } export interface ListAnnotationStoresFilter { /** * A status to filter on. */ status?: StoreStatus; } export interface ListAnnotationStoresRequest { /** * IDs of stores to list. */ ids?: ListAnnotationStoresRequestIdsList; /** * The maximum number of stores to return in one page of results. */ maxResults?: ListAnnotationStoresRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: ListAnnotationStoresRequestNextTokenString; /** * A filter to apply to the list. */ filter?: ListAnnotationStoresFilter; } export type ListAnnotationStoresRequestIdsList = ResourceIdentifier[]; export type ListAnnotationStoresRequestMaxResultsInteger = number; export type ListAnnotationStoresRequestNextTokenString = string; export interface ListAnnotationStoresResponse { /** * A list of stores. */ annotationStores?: AnnotationStoreItems; /** * A pagination token that's included if more results are available. */ nextToken?: String; } export interface ListMultipartReadSetUploadsRequest { /** * The Sequence Store ID used for the multipart uploads. */ sequenceStoreId: SequenceStoreId; /** * The maximum number of multipart uploads returned in a page. */ maxResults?: ListMultipartReadSetUploadsRequestMaxResultsInteger; /** * Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results. */ nextToken?: NextToken; } export type ListMultipartReadSetUploadsRequestMaxResultsInteger = number; export interface ListMultipartReadSetUploadsResponse { /** * Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results. */ nextToken?: NextToken; /** * An array of multipart uploads. */ uploads?: MultipartReadSetUploadList; } export interface ListReadSetActivationJobsRequest { /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The maximum number of read set activation jobs to return in one page of results. */ maxResults?: ListReadSetActivationJobsRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: ActivateReadSetFilter; } export type ListReadSetActivationJobsRequestMaxResultsInteger = number; export interface ListReadSetActivationJobsResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of jobs. */ activationJobs?: ActivateReadSetJobList; } export interface ListReadSetExportJobsRequest { /** * The jobs' sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The maximum number of jobs to return in one page of results. */ maxResults?: ListReadSetExportJobsRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: ExportReadSetFilter; } export type ListReadSetExportJobsRequestMaxResultsInteger = number; export interface ListReadSetExportJobsResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of jobs. */ exportJobs?: ExportReadSetJobDetailList; } export interface ListReadSetImportJobsRequest { /** * The maximum number of jobs to return in one page of results. */ maxResults?: ListReadSetImportJobsRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * The jobs' sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * A filter to apply to the list. */ filter?: ImportReadSetFilter; } export type ListReadSetImportJobsRequestMaxResultsInteger = number; export interface ListReadSetImportJobsResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of jobs. */ importJobs?: ImportReadSetJobList; } export interface ListReadSetUploadPartsRequest { /** * The Sequence Store ID used for the multipart uploads. */ sequenceStoreId: SequenceStoreId; /** * The ID for the initiated multipart upload. */ uploadId: UploadId; /** * The source file for the upload part. */ partSource: ReadSetPartSource; /** * The maximum number of read set upload parts returned in a page. */ maxResults?: ListReadSetUploadPartsRequestMaxResultsInteger; /** * Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results. */ nextToken?: NextToken; /** * Attributes used to filter for a specific subset of read set part uploads. */ filter?: ReadSetUploadPartListFilter; } export type ListReadSetUploadPartsRequestMaxResultsInteger = number; export interface ListReadSetUploadPartsResponse { /** * Next token returned in the response of a previous ListReadSetUploadParts call. Used to get the next page of results. */ nextToken?: NextToken; /** * An array of upload parts. */ parts?: ReadSetUploadPartList; } export interface ListReadSetsRequest { /** * The jobs' sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The maximum number of read sets to return in one page of results. */ maxResults?: ListReadSetsRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: ReadSetFilter; } export type ListReadSetsRequestMaxResultsInteger = number; export interface ListReadSetsResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of read sets. */ readSets: ReadSetList; } export interface ListReferenceImportJobsRequest { /** * The maximum number of jobs to return in one page of results. */ maxResults?: ListReferenceImportJobsRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * A filter to apply to the list. */ filter?: ImportReferenceFilter; } export type ListReferenceImportJobsRequestMaxResultsInteger = number; export interface ListReferenceImportJobsResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A lis of jobs. */ importJobs?: ImportReferenceJobList; } export interface ListReferenceStoresRequest { /** * The maximum number of stores to return in one page of results. */ maxResults?: ListReferenceStoresRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: ReferenceStoreFilter; } export type ListReferenceStoresRequestMaxResultsInteger = number; export interface ListReferenceStoresResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of reference stores. */ referenceStores: ReferenceStoreDetailList; } export interface ListReferencesRequest { /** * The references' reference store ID. */ referenceStoreId: ReferenceStoreId; /** * The maximum number of references to return in one page of results. */ maxResults?: ListReferencesRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: ReferenceFilter; } export type ListReferencesRequestMaxResultsInteger = number; export interface ListReferencesResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of references. */ references: ReferenceList; } export interface ListRunGroupsRequest { /** * The run groups' name. */ name?: RunGroupName; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ startingToken?: RunGroupListToken; /** * The maximum number of run groups to return in one page of results. */ maxResults?: ListRunGroupsRequestMaxResultsInteger; } export type ListRunGroupsRequestMaxResultsInteger = number; export interface ListRunGroupsResponse { /** * A list of groups. */ items?: RunGroupList; /** * A pagination token that's included if more results are available. */ nextToken?: RunGroupListToken; } export interface ListRunTasksRequest { /** * The run's ID. */ id: RunId; /** * Filter the list by status. */ status?: TaskStatus; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ startingToken?: TaskListToken; /** * The maximum number of run tasks to return in one page of results. */ maxResults?: ListRunTasksRequestMaxResultsInteger; } export type ListRunTasksRequestMaxResultsInteger = number; export interface ListRunTasksResponse { /** * A list of tasks. */ items?: TaskList; /** * A pagination token that's included if more results are available. */ nextToken?: TaskListToken; } export interface ListRunsRequest { /** * Filter the list by run name. */ name?: RunName; /** * Filter the list by run group ID. */ runGroupId?: RunGroupId; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ startingToken?: RunListToken; /** * The maximum number of runs to return in one page of results. */ maxResults?: ListRunsRequestMaxResultsInteger; /** * The status of a run. */ status?: RunStatus; } export type ListRunsRequestMaxResultsInteger = number; export interface ListRunsResponse { /** * A list of runs. */ items?: RunList; /** * A pagination token that's included if more results are available. */ nextToken?: RunListToken; } export interface ListSequenceStoresRequest { /** * The maximum number of stores to return in one page of results. */ maxResults?: ListSequenceStoresRequestMaxResultsInteger; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: NextToken; /** * A filter to apply to the list. */ filter?: SequenceStoreFilter; } export type ListSequenceStoresRequestMaxResultsInteger = number; export interface ListSequenceStoresResponse { /** * A pagination token that's included if more results are available. */ nextToken?: NextToken; /** * A list of sequence stores. */ sequenceStores: SequenceStoreDetailList; } export interface ListTagsForResourceRequest { /** * The resource's ARN. */ resourceArn: TagArn; } export interface ListTagsForResourceResponse { /** * A list of tags. */ tags: TagMap; } export interface ListVariantImportJobsFilter { /** * A status to filter on. */ status?: JobStatus; /** * A store name to filter on. */ storeName?: String; } export interface ListVariantImportJobsRequest { /** * The maximum number of import jobs to return in one page of results. */ maxResults?: ListVariantImportJobsRequestMaxResultsInteger; /** * A list of job IDs. */ ids?: ListVariantImportJobsRequestIdsList; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: ListVariantImportJobsRequestNextTokenString; /** * A filter to apply to the list. */ filter?: ListVariantImportJobsFilter; } export type ListVariantImportJobsRequestIdsList = ResourceIdentifier[]; export type ListVariantImportJobsRequestMaxResultsInteger = number; export type ListVariantImportJobsRequestNextTokenString = string; export interface ListVariantImportJobsResponse { /** * A list of jobs. */ variantImportJobs?: VariantImportJobItems; /** * A pagination token that's included if more results are available. */ nextToken?: String; } export interface ListVariantStoresFilter { /** * A status to filter on. */ status?: StoreStatus; } export interface ListVariantStoresRequest { /** * The maximum number of stores to return in one page of results. */ maxResults?: ListVariantStoresRequestMaxResultsInteger; /** * A list of store IDs. */ ids?: ListVariantStoresRequestIdsList; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ nextToken?: ListVariantStoresRequestNextTokenString; /** * A filter to apply to the list. */ filter?: ListVariantStoresFilter; } export type ListVariantStoresRequestIdsList = ResourceIdentifier[]; export type ListVariantStoresRequestMaxResultsInteger = number; export type ListVariantStoresRequestNextTokenString = string; export interface ListVariantStoresResponse { /** * A list of variant stores. */ variantStores?: VariantStoreItems; /** * A pagination token that's included if more results are available. */ nextToken?: String; } export interface ListWorkflowsRequest { /** * The workflows' type. */ type?: WorkflowType; /** * The workflows' name. */ name?: WorkflowName; /** * Specify the pagination token from a previous request to retrieve the next page of results. */ startingToken?: WorkflowListToken; /** * The maximum number of workflows to return in one page of results. */ maxResults?: ListWorkflowsRequestMaxResultsInteger; } export type ListWorkflowsRequestMaxResultsInteger = number; export interface ListWorkflowsResponse { /** * The workflows' items. */ items?: WorkflowList; /** * A pagination token that's included if more results are available. */ nextToken?: WorkflowListToken; } export type Long = number; export type Md5 = string; export type MultipartReadSetUploadList = MultipartReadSetUploadListItem[]; export interface MultipartReadSetUploadListItem { /** * The sequence store ID used for the multipart upload. */ sequenceStoreId: SequenceStoreId; /** * The ID for the initiated multipart upload. */ uploadId: UploadId; /** * The type of file the read set originated from. */ sourceFileType: FileType; /** * The read set source's subject ID. */ subjectId: SubjectId; /** * The read set source's sample ID. */ sampleId: SampleId; /** * The source of an uploaded part. */ generatedFrom: GeneratedFrom; /** * The source's reference ARN. */ referenceArn: ReferenceArn; /** * The name of a read set. */ name?: ReadSetName; /** * The description of a read set. */ description?: ReadSetDescription; /** * Any tags you wish to add to a read set. */ tags?: TagMap; /** * The time stamp for when a direct upload was created. */ creationTime: SyntheticTimestamp_date_time; } export type NextToken = string; export type PrimitiveBoolean = boolean; export type Quote = string; export type QuoteAll = boolean; export type Range = string; export interface ReadOptions { /** * The file's field separator. */ sep?: Separator; /** * The file's encoding. */ encoding?: Encoding; /** * The file's quote character. */ quote?: Quote; /** * Whether all values need to be quoted, or just those that contain quotes. */ quoteAll?: QuoteAll; /** * A character for escaping quotes in the file. */ escape?: EscapeChar; /** * Whether quotes need to be escaped in the file. */ escapeQuotes?: EscapeQuotes; /** * The file's comment character. */ comment?: CommentChar; /** * Whether the file has a header row. */ header?: Header; /** * A line separator for the file. */ lineSep?: LineSep; } export type ReadSetActivationJobItemStatus = "NOT_STARTED"|"IN_PROGRESS"|"FINISHED"|"FAILED"|string; export type ReadSetActivationJobStatus = "SUBMITTED"|"IN_PROGRESS"|"CANCELLING"|"CANCELLED"|"FAILED"|"COMPLETED"|"COMPLETED_WITH_FAILURES"|string; export type ReadSetArn = string; export interface ReadSetBatchError { /** * The error's ID. */ id: ReadSetId; /** * The error's code. */ code: String; /** * The error's message. */ message: String; } export type ReadSetBatchErrorList = ReadSetBatchError[]; export type ReadSetDescription = string; export type ReadSetExportJobItemStatus = "NOT_STARTED"|"IN_PROGRESS"|"FINISHED"|"FAILED"|string; export type ReadSetExportJobStatus = "SUBMITTED"|"IN_PROGRESS"|"CANCELLING"|"CANCELLED"|"FAILED"|"COMPLETED"|"COMPLETED_WITH_FAILURES"|string; export type ReadSetFile = "SOURCE1"|"SOURCE2"|"INDEX"|string; export interface ReadSetFiles { /** * The location of the first file in Amazon S3. */ source1?: FileInformation; /** * The location of the second file in Amazon S3. */ source2?: FileInformation; /** * The files' index. */ index?: FileInformation; } export interface ReadSetFilter { /** * A name to filter on. */ name?: ReadSetName; /** * A status to filter on. */ status?: ReadSetStatus; /** * A genome reference ARN to filter on. */ referenceArn?: ReferenceArn; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; /** * The read set source's sample ID. */ sampleId?: SampleId; /** * The read set source's subject ID. */ subjectId?: SubjectId; /** * Where the source originated. */ generatedFrom?: GeneratedFrom; } export type ReadSetId = string; export type ReadSetIdList = ReadSetId[]; export type ReadSetImportJobItemStatus = "NOT_STARTED"|"IN_PROGRESS"|"FINISHED"|"FAILED"|string; export type ReadSetImportJobStatus = "SUBMITTED"|"IN_PROGRESS"|"CANCELLING"|"CANCELLED"|"FAILED"|"COMPLETED"|"COMPLETED_WITH_FAILURES"|string; export type ReadSetList = ReadSetListItem[]; export interface ReadSetListItem { /** * The read set's ID. */ id: ReadSetId; /** * The read set's ARN. */ arn: ReadSetArn; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The read set's subject ID. */ subjectId?: SubjectId; /** * The read set's sample ID. */ sampleId?: SampleId; /** * The read set's status. */ status: ReadSetStatus; /** * The read set's name. */ name?: ReadSetName; /** * The read set's description. */ description?: ReadSetDescription; /** * The read set's genome reference ARN. */ referenceArn?: ReferenceArn; /** * The read set's file type. */ fileType: FileType; sequenceInformation?: SequenceInformation; /** * When the read set was created. */ creationTime: SyntheticTimestamp_date_time; /** * The status for a read set. It provides more detail as to why the read set has a status. */ statusMessage?: ReadSetStatusMessage; } export type ReadSetName = string; export type ReadSetPartSource = "SOURCE1"|"SOURCE2"|string; export type ReadSetPartStreamingBlob = Buffer|Uint8Array|Blob|string|Readable; export type ReadSetStatus = "ARCHIVED"|"ACTIVATING"|"ACTIVE"|"DELETING"|"DELETED"|"PROCESSING_UPLOAD"|"UPLOAD_FAILED"|string; export type ReadSetStatusMessage = string; export type ReadSetStreamingBlob = Buffer|Uint8Array|Blob|string|Readable; export type ReadSetUploadPartList = ReadSetUploadPartListItem[]; export interface ReadSetUploadPartListFilter { /** * Filters for read set uploads after a specified time. */ createdAfter?: SyntheticTimestamp_date_time; /** * Filters for read set part uploads before a specified time. */ createdBefore?: SyntheticTimestamp_date_time; } export interface ReadSetUploadPartListItem { /** * The number identifying the part in an upload. */ partNumber: ReadSetUploadPartListItemPartNumberInteger; /** * The size of the the part in an upload. */ partSize: ReadSetUploadPartListItemPartSizeLong; /** * The origin of the part being direct uploaded. */ partSource: ReadSetPartSource; /** * A unique identifier used to confirm that parts are being added to the correct upload. */ checksum: String; /** * The time stamp for when a direct upload was created. */ creationTime?: SyntheticTimestamp_date_time; /** * The time stamp for the most recent update to an uploaded part. */ lastUpdatedTime?: SyntheticTimestamp_date_time; } export type ReadSetUploadPartListItemPartNumberInteger = number; export type ReadSetUploadPartListItemPartSizeLong = number; export type ReferenceArn = string; export type ReferenceDescription = string; export type ReferenceFile = "SOURCE"|"INDEX"|string; export interface ReferenceFiles { /** * The source file's location in Amazon S3. */ source?: FileInformation; /** * The files' index. */ index?: FileInformation; } export interface ReferenceFilter { /** * A name to filter on. */ name?: ReferenceName; /** * An MD5 checksum to filter on. */ md5?: Md5; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export type ReferenceId = string; export type ReferenceImportJobItemStatus = "NOT_STARTED"|"IN_PROGRESS"|"FINISHED"|"FAILED"|string; export type ReferenceImportJobStatus = "SUBMITTED"|"IN_PROGRESS"|"CANCELLING"|"CANCELLED"|"FAILED"|"COMPLETED"|"COMPLETED_WITH_FAILURES"|string; export interface ReferenceItem { /** * The reference's ARN. */ referenceArn?: ReferenceArn; } export type ReferenceList = ReferenceListItem[]; export interface ReferenceListItem { /** * The reference's ID. */ id: ReferenceId; /** * The reference's ARN. */ arn: ReferenceArn; /** * The reference's store ID. */ referenceStoreId: ReferenceStoreId; /** * The reference's MD5 checksum. */ md5: Md5; /** * The reference's status. */ status?: ReferenceStatus; /** * The reference's name. */ name?: ReferenceName; /** * The reference's description. */ description?: ReferenceDescription; /** * When the reference was created. */ creationTime: SyntheticTimestamp_date_time; /** * When the reference was updated. */ updateTime: SyntheticTimestamp_date_time; } export type ReferenceName = string; export type ReferenceStatus = "ACTIVE"|"DELETING"|"DELETED"|string; export type ReferenceStoreArn = string; export type ReferenceStoreDescription = string; export interface ReferenceStoreDetail { /** * The store's ARN. */ arn: ReferenceStoreArn; /** * The store's ID. */ id: ReferenceStoreId; /** * The store's name. */ name?: ReferenceStoreName; /** * The store's description. */ description?: ReferenceStoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; } export type ReferenceStoreDetailList = ReferenceStoreDetail[]; export interface ReferenceStoreFilter { /** * The name to filter on. */ name?: ReferenceStoreName; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export type ReferenceStoreId = string; export type ReferenceStoreName = string; export type ReferenceStreamingBlob = Buffer|Uint8Array|Blob|string|Readable; export type ResourceId = string; export type ResourceIdentifier = string; export type RoleArn = string; export type RunArn = string; export type RunExport = "DEFINITION"|string; export type RunExportList = RunExport[]; export type RunGroupArn = string; export type RunGroupId = string; export type RunGroupList = RunGroupListItem[]; export interface RunGroupListItem { /** * The group's ARN. */ arn?: RunGroupArn; /** * The group's ID. */ id?: RunGroupId; /** * The group's name. */ name?: RunGroupName; /** * The group's maximum CPU count setting. */ maxCpus?: RunGroupListItemMaxCpusInteger; /** * The group's maximum concurrent run setting. */ maxRuns?: RunGroupListItemMaxRunsInteger; /** * The group's maximum duration setting in minutes. */ maxDuration?: RunGroupListItemMaxDurationInteger; /** * When the group was created. */ creationTime?: RunGroupTimestamp; /** * The maximum GPUs that can be used by a run group. */ maxGpus?: RunGroupListItemMaxGpusInteger; } export type RunGroupListItemMaxCpusInteger = number; export type RunGroupListItemMaxDurationInteger = number; export type RunGroupListItemMaxGpusInteger = number; export type RunGroupListItemMaxRunsInteger = number; export type RunGroupListToken = string; export type RunGroupName = string; export type RunGroupRequestId = string; export type RunGroupTimestamp = Date; export type RunId = string; export type RunLeftNormalization = boolean; export type RunList = RunListItem[]; export interface RunListItem { /** * The run's ARN. */ arn?: RunArn; /** * The run's ID. */ id?: RunId; /** * The run's status. */ status?: RunStatus; /** * The run's workflow ID. */ workflowId?: WorkflowId; /** * The run's name. */ name?: RunName; /** * The run's priority. */ priority?: RunListItemPriorityInteger; /** * The run's storage capacity. */ storageCapacity?: RunListItemStorageCapacityInteger; /** * When the run was created. */ creationTime?: RunTimestamp; /** * When the run started. */ startTime?: RunTimestamp; /** * When the run stopped. */ stopTime?: RunTimestamp; } export type RunListItemPriorityInteger = number; export type RunListItemStorageCapacityInteger = number; export type RunListToken = string; export type RunLogLevel = "OFF"|"FATAL"|"ERROR"|"ALL"|string; export type RunName = string; export type RunOutputUri = string; export interface RunParameters { } export type RunRequestId = string; export type RunResourceDigest = string; export type RunResourceDigestKey = string; export type RunResourceDigests = {[key: string]: RunResourceDigest}; export type RunRoleArn = string; export type RunStartedBy = string; export type RunStatus = "PENDING"|"STARTING"|"RUNNING"|"STOPPING"|"COMPLETED"|"DELETED"|"CANCELLED"|"FAILED"|string; export type RunStatusMessage = string; export type RunTimestamp = Date; export type S3Destination = string; export type S3Uri = string; export type SampleId = string; export type SchemaItem = {[key: string]: SchemaValueType}; export type SchemaItemKeyString = string; export type SchemaValueType = "LONG"|"INT"|"STRING"|"FLOAT"|"DOUBLE"|"BOOLEAN"|string; export type Separator = string; export interface SequenceInformation { /** * The sequence's total read count. */ totalReadCount?: Long; /** * The sequence's total base count. */ totalBaseCount?: Long; /** * Where the sequence originated. */ generatedFrom?: GeneratedFrom; /** * The sequence's alignment setting. */ alignment?: String; } export type SequenceStoreArn = string; export type SequenceStoreDescription = string; export interface SequenceStoreDetail { /** * The store's ARN. */ arn: SequenceStoreArn; /** * The store's ID. */ id: SequenceStoreId; /** * The store's name. */ name?: SequenceStoreName; /** * The store's description. */ description?: SequenceStoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig?: SseConfig; /** * When the store was created. */ creationTime: SyntheticTimestamp_date_time; /** * An S3 location that is used to store files that have failed a direct upload. */ fallbackLocation?: S3Destination; } export type SequenceStoreDetailList = SequenceStoreDetail[]; export interface SequenceStoreFilter { /** * A name to filter on. */ name?: SequenceStoreName; /** * The filter's start date. */ createdAfter?: SyntheticTimestamp_date_time; /** * The filter's end date. */ createdBefore?: SyntheticTimestamp_date_time; } export type SequenceStoreId = string; export type SequenceStoreName = string; export interface SourceFiles { /** * The location of the first file in Amazon S3. */ source1: S3Uri; /** * The location of the second file in Amazon S3. */ source2?: S3Uri; } export interface SseConfig { /** * The encryption type. */ type: EncryptionType; /** * An encryption key ARN. */ keyArn?: SseConfigKeyArnString; } export type SseConfigKeyArnString = string; export interface StartAnnotationImportRequest { /** * A destination annotation store for the job. */ destinationName: StoreName; /** * A service role for the job. */ roleArn: Arn; /** * Items to import. */ items: AnnotationImportItemSources; /** * Formatting options for the annotation file. */ formatOptions?: FormatOptions; /** * The job's left normalization setting. */ runLeftNormalization?: RunLeftNormalization; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export interface StartAnnotationImportResponse { /** * The job's ID. */ jobId: ResourceId; } export interface StartReadSetActivationJobRequest { /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * To ensure that jobs don't run multiple times, specify a unique token for each job. */ clientToken?: ClientToken; /** * The job's source files. */ sources: StartReadSetActivationJobRequestSourcesList; } export type StartReadSetActivationJobRequestSourcesList = StartReadSetActivationJobSourceItem[]; export interface StartReadSetActivationJobResponse { /** * The job's ID. */ id: ActivationJobId; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's status. */ status: ReadSetActivationJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; } export interface StartReadSetActivationJobSourceItem { /** * The source's read set ID. */ readSetId: ReadSetId; } export interface StartReadSetExportJobRequest { /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * A location for exported files in Amazon S3. */ destination: S3Destination; /** * A service role for the job. */ roleArn: RoleArn; /** * To ensure that jobs don't run multiple times, specify a unique token for each job. */ clientToken?: ClientToken; /** * The job's source files. */ sources: StartReadSetExportJobRequestSourcesList; } export type StartReadSetExportJobRequestSourcesList = ExportReadSet[]; export interface StartReadSetExportJobResponse { /** * The job's ID. */ id: ExportJobId; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's output location. */ destination: S3Destination; /** * The job's status. */ status: ReadSetExportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; } export interface StartReadSetImportJobRequest { /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * A service role for the job. */ roleArn: RoleArn; /** * To ensure that jobs don't run multiple times, specify a unique token for each job. */ clientToken?: ClientToken; /** * The job's source files. */ sources: StartReadSetImportJobRequestSourcesList; } export type StartReadSetImportJobRequestSourcesList = StartReadSetImportJobSourceItem[]; export interface StartReadSetImportJobResponse { /** * The job's ID. */ id: ImportJobId; /** * The read set's sequence store ID. */ sequenceStoreId: SequenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReadSetImportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; } export interface StartReadSetImportJobSourceItem { /** * The source files' location in Amazon S3. */ sourceFiles: SourceFiles; /** * The source's file type. */ sourceFileType: FileType; /** * The source's subject ID. */ subjectId: SubjectId; /** * The source's sample ID. */ sampleId: SampleId; /** * Where the source originated. */ generatedFrom?: GeneratedFrom; /** * The source's reference ARN. */ referenceArn: ReferenceArn; /** * The source's name. */ name?: ReadSetName; /** * The source's description. */ description?: ReadSetDescription; /** * The source's tags. */ tags?: TagMap; } export interface StartReferenceImportJobRequest { /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * A service role for the job. */ roleArn: RoleArn; /** * To ensure that jobs don't run multiple times, specify a unique token for each job. */ clientToken?: ClientToken; /** * The job's source files. */ sources: StartReferenceImportJobRequestSourcesList; } export type StartReferenceImportJobRequestSourcesList = StartReferenceImportJobSourceItem[]; export interface StartReferenceImportJobResponse { /** * The job's ID. */ id: ImportJobId; /** * The job's reference store ID. */ referenceStoreId: ReferenceStoreId; /** * The job's service role ARN. */ roleArn: RoleArn; /** * The job's status. */ status: ReferenceImportJobStatus; /** * When the job was created. */ creationTime: SyntheticTimestamp_date_time; } export interface StartReferenceImportJobSourceItem { /** * The source file's location in Amazon S3. */ sourceFile: S3Uri; /** * The source's name. */ name: ReferenceName; /** * The source's description. */ description?: ReferenceDescription; /** * The source's tags. */ tags?: TagMap; } export interface StartRunRequest { /** * The run's workflow ID. */ workflowId?: WorkflowId; /** * The run's workflows type. */ workflowType?: WorkflowType; /** * The run's ID. */ runId?: RunId; /** * A service role for the run. */ roleArn: RunRoleArn; /** * A name for the run. */ name?: RunName; /** * The run's group ID. */ runGroupId?: RunGroupId; /** * A priority for the run. */ priority?: StartRunRequestPriorityInteger; /** * Parameters for the run. */ parameters?: RunParameters; /** * A storage capacity for the run in gigabytes. */ storageCapacity?: StartRunRequestStorageCapacityInteger; /** * An output URI for the run. */ outputUri?: RunOutputUri; /** * A log level for the run. */ logLevel?: RunLogLevel; /** * Tags for the run. */ tags?: TagMap; /** * To ensure that requests don't run multiple times, specify a unique ID for each request. */ requestId: RunRequestId; } export type StartRunRequestPriorityInteger = number; export type StartRunRequestStorageCapacityInteger = number; export interface StartRunResponse { /** * The run's ARN. */ arn?: RunArn; /** * The run's ID. */ id?: RunId; /** * The run's status. */ status?: RunStatus; /** * The run's tags. */ tags?: TagMap; } export interface StartVariantImportRequest { /** * The destination variant store for the job. */ destinationName: StoreName; /** * A service role for the job. */ roleArn: Arn; /** * Items to import. */ items: VariantImportItemSources; /** * The job's left normalization setting. */ runLeftNormalization?: RunLeftNormalization; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export interface StartVariantImportResponse { /** * The job's ID. */ jobId: ResourceId; } export type StatusMessage = string; export type StoreDescription = string; export type StoreFormat = "GFF"|"TSV"|"VCF"|string; export type StoreName = string; export interface StoreOptions { /** * File settings for a TSV store. */ tsvStoreOptions?: TsvStoreOptions; } export type StoreStatus = "CREATING"|"UPDATING"|"DELETING"|"ACTIVE"|"FAILED"|string; export type String = string; export type SubjectId = string; export type SyntheticTimestamp_date_time = Date; export type TagArn = string; export type TagKey = string; export type TagKeyList = TagKey[]; export type TagMap = {[key: string]: TagValue}; export interface TagResourceRequest { /** * The resource's ARN. */ resourceArn: TagArn; /** * Tags for the resource. */ tags: TagResourceRequestTagsMap; } export type TagResourceRequestTagsMap = {[key: string]: TagValue}; export interface TagResourceResponse { } export type TagValue = string; export type TaskId = string; export type TaskList = TaskListItem[]; export interface TaskListItem { /** * The task's ID. */ taskId?: TaskId; /** * The task's status. */ status?: TaskStatus; /** * The task's name. */ name?: TaskName; /** * The task's CPU count. */ cpus?: TaskListItemCpusInteger; /** * The task's memory use in gigabyes. */ memory?: TaskListItemMemoryInteger; /** * When the task was created. */ creationTime?: TaskTimestamp; /** * When the task started. */ startTime?: TaskTimestamp; /** * When the task stopped. */ stopTime?: TaskTimestamp; /** * The number of Graphics Processing Units (GPU) specified for the task. */ gpus?: TaskListItemGpusInteger; } export type TaskListItemCpusInteger = number; export type TaskListItemGpusInteger = number; export type TaskListItemMemoryInteger = number; export type TaskListToken = string; export type TaskLogStream = string; export type TaskName = string; export type TaskStatus = "PENDING"|"STARTING"|"RUNNING"|"STOPPING"|"COMPLETED"|"CANCELLED"|"FAILED"|string; export type TaskStatusMessage = string; export type TaskTimestamp = Date; export interface TsvOptions { /** * The file's read options. */ readOptions?: ReadOptions; } export interface TsvStoreOptions { /** * The store's annotation type. */ annotationType?: AnnotationType; /** * The store's header key to column name mapping. */ formatToHeader?: FormatToHeader; /** * The store's schema. */ schema?: TsvStoreOptionsSchemaList; } export type TsvStoreOptionsSchemaList = SchemaItem[]; export interface UntagResourceRequest { /** * The resource's ARN. */ resourceArn: TagArn; /** * Keys of tags to remove. */ tagKeys: TagKeyList; } export interface UntagResourceResponse { } export interface UpdateAnnotationStoreRequest { /** * A name for the store. */ name: String; /** * A description for the store. */ description?: StoreDescription; } export interface UpdateAnnotationStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's name. */ name: String; /** * The store's description. */ description: StoreDescription; /** * When the store was created. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; /** * Parsing options for the store. */ storeOptions?: StoreOptions; /** * The annotation file format of the store. */ storeFormat?: StoreFormat; } export interface UpdateRunGroupRequest { /** * The group's ID. */ id: RunGroupId; /** * A name for the group. */ name?: RunGroupName; /** * The maximum number of CPUs to use. */ maxCpus?: UpdateRunGroupRequestMaxCpusInteger; /** * The maximum number of concurrent runs for the group. */ maxRuns?: UpdateRunGroupRequestMaxRunsInteger; /** * A maximum run time for the group in minutes. */ maxDuration?: UpdateRunGroupRequestMaxDurationInteger; /** * The maximum GPUs that can be used by a run group. */ maxGpus?: UpdateRunGroupRequestMaxGpusInteger; } export type UpdateRunGroupRequestMaxCpusInteger = number; export type UpdateRunGroupRequestMaxDurationInteger = number; export type UpdateRunGroupRequestMaxGpusInteger = number; export type UpdateRunGroupRequestMaxRunsInteger = number; export type UpdateTime = Date; export interface UpdateVariantStoreRequest { /** * A name for the store. */ name: String; /** * A description for the store. */ description?: StoreDescription; } export interface UpdateVariantStoreResponse { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's name. */ name: String; /** * The store's description. */ description: StoreDescription; /** * When the store was created. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; } export interface UpdateWorkflowRequest { /** * The workflow's ID. */ id: WorkflowId; /** * A name for the workflow. */ name?: WorkflowName; /** * A description for the workflow. */ description?: WorkflowDescription; } export type UploadId = string; export interface UploadReadSetPartRequest { /** * The Sequence Store ID used for the multipart upload. */ sequenceStoreId: SequenceStoreId; /** * The ID for the initiated multipart upload. */ uploadId: UploadId; /** * The source file for an upload part. */ partSource: ReadSetPartSource; /** * The number of the part being uploaded. */ partNumber: UploadReadSetPartRequestPartNumberInteger; /** * The read set data to upload for a part. */ payload: ReadSetPartStreamingBlob; } export type UploadReadSetPartRequestPartNumberInteger = number; export interface UploadReadSetPartResponse { /** * An identifier used to confirm that parts are being added to the intended upload. */ checksum: String; } export interface VariantImportItemDetail { /** * The source file's location in Amazon S3. */ source: S3Uri; /** * The item's job status. */ jobStatus: JobStatus; /** * A message that provides additional context about a job */ statusMessage?: JobStatusMsg; } export type VariantImportItemDetails = VariantImportItemDetail[]; export interface VariantImportItemSource { /** * The source file's location in Amazon S3. */ source: S3Uri; } export type VariantImportItemSources = VariantImportItemSource[]; export interface VariantImportJobItem { /** * The job's ID. */ id: String; /** * The job's destination variant store. */ destinationName: String; /** * The job's service role ARN. */ roleArn: Arn; /** * The job's status. */ status: JobStatus; /** * When the job was created. */ creationTime: CreationTime; /** * When the job was updated. */ updateTime: UpdateTime; /** * When the job completed. */ completionTime?: CompletionTime; /** * The job's left normalization setting. */ runLeftNormalization?: RunLeftNormalization; /** * The annotation schema generated by the parsed annotation data. */ annotationFields?: AnnotationFieldMap; } export type VariantImportJobItems = VariantImportJobItem[]; export interface VariantStoreItem { /** * The store's ID. */ id: ResourceId; /** * The store's genome reference. */ reference: ReferenceItem; /** * The store's status. */ status: StoreStatus; /** * The store's ARN. */ storeArn: Arn; /** * The store's name. */ name: String; /** * The store's description. */ description: StoreDescription; /** * The store's server-side encryption (SSE) settings. */ sseConfig: SseConfig; /** * When the store was created. */ creationTime: CreationTime; /** * When the store was updated. */ updateTime: UpdateTime; /** * The store's status message. */ statusMessage: StatusMessage; /** * The store's size in bytes. */ storeSizeBytes: Long; } export type VariantStoreItems = VariantStoreItem[]; export interface VcfOptions { /** * The file's ignore qual field setting. */ ignoreQualField?: Boolean; /** * The file's ignore filter field setting. */ ignoreFilterField?: Boolean; } export type WorkflowArn = string; export type WorkflowDefinition = string; export type WorkflowDescription = string; export type WorkflowDigest = string; export type WorkflowEngine = "WDL"|"NEXTFLOW"|string; export type WorkflowExport = "DEFINITION"|string; export type WorkflowExportList = WorkflowExport[]; export type WorkflowId = string; export type WorkflowList = WorkflowListItem[]; export interface WorkflowListItem { /** * The workflow's ARN. */ arn?: WorkflowArn; /** * The workflow's ID. */ id?: WorkflowId; /** * The workflow's name. */ name?: WorkflowName; /** * The workflow's status. */ status?: WorkflowStatus; /** * The workflow's type. */ type?: WorkflowType; /** * The workflow's digest. */ digest?: WorkflowDigest; /** * When the workflow was created. */ creationTime?: WorkflowTimestamp; /** * Any metadata available for workflow. The information listed may vary depending on the workflow, and there may also be no metadata to return. */ metadata?: WorkflowMetadata; } export type WorkflowListToken = string; export type WorkflowMain = string; export type WorkflowMetadata = {[key: string]: WorkflowMetadataValue}; export type WorkflowMetadataKey = string; export type WorkflowMetadataValue = string; export type WorkflowName = string; export interface WorkflowParameter { /** * The parameter's description. */ description?: WorkflowParameterDescription; /** * Whether the parameter is optional. */ optional?: Boolean; } export type WorkflowParameterDescription = string; export type WorkflowParameterName = string; export type WorkflowParameterTemplate = {[key: string]: WorkflowParameter}; export type WorkflowRequestId = string; export type WorkflowStatus = "CREATING"|"ACTIVE"|"UPDATING"|"DELETED"|"FAILED"|"INACTIVE"|string; export type WorkflowStatusMessage = string; export type WorkflowTimestamp = Date; export type WorkflowType = "PRIVATE"|"READY2RUN"|string; /** * A string in YYYY-MM-DD format that represents the latest possible API version that can be used in this service. Specify 'latest' to use the latest possible version. */ export type apiVersion = "2022-11-28"|"latest"|string; export interface ClientApiVersions { /** * A string in YYYY-MM-DD format that represents the latest possible API version that can be used in this service. Specify 'latest' to use the latest possible version. */ apiVersion?: apiVersion; } export type ClientConfiguration = ServiceConfigurationOptions & ClientApiVersions; /** * Contains interfaces for use with the Omics client. */ export import Types = Omics; } export = Omics;